Escrituras muy lentas en MySQL 8: esperando la confirmación del controlador

Question

Tengo la instalación de la ventana acoplable MySQL 8 instalada en un dispositivo de borde que tiene las siguientes dos tablas para escribir

video_paths | CREATE TABLE `video_paths` (
  `entry` int(11) NOT NULL AUTO_INCREMENT,
  `timestamp` bigint(20) NOT NULL,
  `duration` int(11) NOT NULL,
  `path` varchar(255) NOT NULL,
  `motion` int(11) NOT NULL DEFAULT '0',
  `cam_id` varchar(255) NOT NULL DEFAULT '',
  `hd` tinyint(1) NOT NULL DEFAULT '0',
  PRIMARY KEY (`entry`),
  KEY `cam_id` (`cam_id`),
  KEY `timestamp` (`timestamp`)
) ENGINE=InnoDB AUTO_INCREMENT=7342309 DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_0900_ai_ci

Y

CREATE TABLE `tracker` (
  `id` int(11) NOT NULL AUTO_INCREMENT,
  `table_name` varchar(255) NOT NULL,
  `primary_key_name` varchar(255) NOT NULL,
  `pointer` int(11) NOT NULL DEFAULT '0',
  PRIMARY KEY (`id`),
  UNIQUE KEY `table_name` (`table_name`)
) ENGINE=InnoDB AUTO_INCREMENT=4 DEFAULT CHARSET=utf8mb4 COLLATE=utf8mb4_0900_ai_ci

Las siguientes consultas se ejecutan cada pocos segundos para hasta 32 cámaras y están tomando mucho tiempo como lo indica el registro de consultas lentas.

UPDATE tracker SET pointer = 7342046 WHERE table_name = 'video_paths'

INSERT INTO video_paths (timestamp,duration,path,cam_id,hd) VALUES (1597548365000,5000,'/s/ss/x-0/v/2020-08-16/3/1.ts','x-1',1)

La mayor parte del tiempo se pasa en el waiting for handler commitestado.

El tamaño total de mis datos (tablas + índice) es ~ 1GB y tengo las siguientes configuraciones habilitadas para optimizar para escritura

skip-log-bin- Deshabilité el registro de la bandeja porque no tengo una réplica y, por lo tanto, no la uso innodb_flush_log_at_trx_commit =2. Estoy optimizando el rendimiento en lugar de la coherencia aquí. range_optimizer_max_mem_size =0Como se menciona en esta pregunta , he permitido que la memoria máxima alcance el optimizador. inndo_buffer_pool_size= 512Mb- ¿Esto debería ser suficiente para mis datos ?.
innodb_log_file_size= 96Mb* 2 archivos

Veo consultas que a veces tardan entre 90 y 100 segundos.

SET timestamp=1597549337;
INSERT INTO video_paths (timestamp,duration,path,cam_id,hd) VALUES (1597548365000,5000,'/s/ss/x-0/v/2020-08-16/3/1.ts','x-1',1);
# Time: 2020-08-16T03:42:24.533408Z
# Query_time: 96.712976  Lock_time: 0.000033 Rows_sent: 0  Rows_examined: 0

--- ACTUALIZAR --- Aquí está el archivo my.cnf completo

my.cnf

[mysqld]
pid-file        = /var/run/mysqld/mysqld.pid
socket          = /var/run/mysqld/mysqld.sock
datadir         = /var/lib/mysql
secure-file-priv= NULL
# Disabling symbolic-links is recommended to prevent assorted security risks
symbolic-links=0

skip-log-bin
innodb_buffer_pool_size=536870912
innodb_log_file_size=100663296

# Custom config should go here
!includedir /etc/mysql/conf.d/

conf.d/docker.cnf 
[mysqld]
skip-host-cache
skip-name-resolve 

El contenedor de la ventana acoplable está usando el modo de host, por lo que la memoria completa de 15 GB está disponible para el contenedor.

--- ACTUALIZACIÓN 2 --- Después de aumentar innodb_buffer_poo_sizea 2 GB como lo sugiere @fyrye, las declaraciones ahora han comenzado a atascarse en STATE = UPDATElugar de waiting for handler commit.

---- ACTUALIZACIÓN 3 --- Parece que la CPU está causando el cuello de botella

** ---- ACTUALIZACIÓN 4 ---- ** Información adicional

1. Tamaño de RAM

              total        used        free      shared  buff/cache   available
Mem:          15909        1711        9385        2491        4813       11600
Swap:             0           0           0

1. No hay dispositivos SSD / NVMe conectados
2. SHOW GLOBAL STATUS - https://pastebin.com/vtWi0PUq
3. SHOW GLOBAL VARIABLES - https://pastebin.com/MUZeG959
4. SHOW FULL PROCESSLIST - https://pastebin.com/eebEcYk7
5. htop: htopaquí está el sistema perimetral que tiene otros 4 contenedores en ejecución que incluyen la aplicación principal, ffmpeg, mqtt, etc.
   
6. ulimit -a:

core file size          (blocks, -c) 0
data seg size           (kbytes, -d) unlimited
scheduling priority             (-e) 0
file size               (blocks, -f) unlimited
pending signals                 (-i) 62576
max locked memory       (kbytes, -l) 64
max memory size         (kbytes, -m) unlimited
open files                      (-n) 1024
pipe size            (512 bytes, -p) 8
POSIX message queues     (bytes, -q) 819200
real-time priority              (-r) 0
stack size              (kbytes, -s) 8192
cpu time               (seconds, -t) unlimited
max user processes              (-u) 62576
virtual memory          (kbytes, -v) unlimited
file locks                      (-x) unlimited

1. opstat -xm 5 4

Linux 4.15.0-106-generic (xxxx)    08/18/2020  _x86_64_    (4 CPU)

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
         26.97    0.00   22.36   22.53    0.00   28.14

Device:         rrqm/s   wrqm/s     r/s     w/s    rMB/s    wMB/s avgrq-sz avgqu-sz   await r_await w_await  svctm  %util
loop0             0.00     0.00    0.00    0.00     0.00     0.00     3.20     0.00    2.40    2.40    0.00   0.00   0.00
sda              13.78     9.89   32.24   11.44     0.37     4.10   209.51    47.52 1079.07   44.07 3994.87  22.39  97.81

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
         19.71    0.00   27.85   40.87    0.00   11.57

Device:         rrqm/s   wrqm/s     r/s     w/s    rMB/s    wMB/s avgrq-sz avgqu-sz   await r_await w_await  svctm  %util
loop0             0.00     0.00    0.00    0.00     0.00     0.00     0.00     0.00    0.00    0.00    0.00   0.00   0.00
sda               0.00     0.00    1.40    4.60     0.03     2.71   934.93   142.66 24221.33  666.29 31390.26 166.67 100.00

avg-cpu:  %user   %nice %system %iowait  %steal   %idle
         20.16    0.00   26.77   28.30    0.00   24.77

Device:         rrqm/s   wrqm/s     r/s     w/s    rMB/s    wMB/s avgrq-sz avgqu-sz   await r_await w_await  svctm  %util
loop0             0.00     0.00    0.00    0.00     0.00     0.00     0.00     0.00    0.00    0.00    0.00   0.00   0.00
sda               0.00     0.00    8.80    5.60     0.03     3.45   496.11   141.28 12507.78  194.00 31858.00  69.44 100.00

1. mpstat -P ALL 5 3

Linux 4.15.0-106-generic (sn-1f0ce8)    08/18/2020  _x86_64_    (4 CPU)

02:15:47 PM  CPU    %usr   %nice    %sys %iowait    %irq   %soft  %steal  %guest  %gnice   %idle
02:15:52 PM  all   21.48    0.00   20.40   29.01    0.00    7.94    0.00    0.00    0.00   21.17
02:15:52 PM    0   24.95    0.00   20.86    5.32    0.00    0.61    0.00    0.00    0.00   48.26
02:15:52 PM    1   17.59    0.00   18.81   57.67    0.00    5.93    0.00    0.00    0.00    0.00
02:15:52 PM    2   21.28    0.00   17.36    0.21    0.00   24.79    0.00    0.00    0.00   36.36
02:15:52 PM    3   22.34    0.00   24.59   52.46    0.00    0.61    0.00    0.00    0.00    0.00

02:15:52 PM  CPU    %usr   %nice    %sys %iowait    %irq   %soft  %steal  %guest  %gnice   %idle
02:15:57 PM  all   20.56    0.00   20.00   28.26    0.00    7.08    0.00    0.00    0.00   24.10
02:15:57 PM    0   24.44    0.00   18.89   12.32    0.00    0.21    0.00    0.00    0.00   44.15
02:15:57 PM    1   17.73    0.00   15.46   33.20    0.00    4.95    0.00    0.00    0.00   28.66
02:15:57 PM    2   18.93    0.00   22.22   12.35    0.00   22.84    0.00    0.00    0.00   23.66
02:15:57 PM    3   21.06    0.00   23.31   55.21    0.00    0.41    0.00    0.00    0.00    0.00

02:15:57 PM  CPU    %usr   %nice    %sys %iowait    %irq   %soft  %steal  %guest  %gnice   %idle
02:16:02 PM  all   21.81    0.00   18.32   26.42    0.00    7.03    0.00    0.00    0.00   26.42
02:16:02 PM    0   26.43    0.00   19.67    0.20    0.00    0.41    0.00    0.00    0.00   53.28
02:16:02 PM    1   20.57    0.00   17.11   45.21    0.00    5.30    0.00    0.00    0.00   11.81
02:16:02 PM    2   19.67    0.00   16.74    0.21    0.00   21.97    0.00    0.00    0.00   41.42
02:16:02 PM    3   20.45    0.00   19.84   58.91    0.00    0.81    0.00    0.00    0.00    0.00

Average:     CPU    %usr   %nice    %sys %iowait    %irq   %soft  %steal  %guest  %gnice   %idle
Average:     all   21.28    0.00   19.57   27.90    0.00    7.35    0.00    0.00    0.00   23.90
Average:       0   25.27    0.00   19.81    5.94    0.00    0.41    0.00    0.00    0.00   48.57
Average:       1   18.63    0.00   17.13   45.39    0.00    5.39    0.00    0.00    0.00   13.45
Average:       2   19.96    0.00   18.78    4.28    0.00   23.20    0.00    0.00    0.00   33.77
Average:       3   21.28    0.00   22.57   55.54    0.00    0.61    0.00    0.00    0.00    0.00

Answer 1

Sugerencias a considerar para su sección my.cnf [mysqld]

log_error=/var/lib/mysql/sn-1f0ce8-error.log  # from stderr to have a visible error log
innodb_lru_scan_depth=100  # from 1024 to conserve 90% CPU cycles used for function
innodb_io_capacity=1900  # from 200 to allow more IOPSecond to your storage device
innodb_flush_neighbors=2  # from 0 to expedite writing to current extent
innodb_innodb_max_dirty_pages_pct_lwm=1  # from 10 percent to expedite writes
innodb_innodb_max_dirty_pages_pct=1  # from 90 percent to reduce innodb_buffer_pool_pages_dirty count
innodb_change_buffer_max_size=50  # from 25 percent to expedite your high volume activity

Verá que estas sugerencias reducirán la ocupación de la CPU y acelerarán la finalización de la consulta.

Para obtener sugerencias adicionales, vea el perfil, el perfil de red para obtener información de contacto y secuencias de comandos de utilidad descargables gratuitas para ayudar con las mejoras de rendimiento.